| Title: | Composable Genomic Track Visualisations for Non-Coders |
|---|---|
| Description: | A plotgardener-based genomic track composer that lets biologists build common EDA visualisations (coverage, Hi-C, splice junctions, transcript structure, protein domains) via a Shiny interface, without writing code, and download a standalone R script that reproduces the exact figure offline. |
| Authors: | Aleksander Pacnik [aut, cre] |
| Maintainer: | Aleksander Pacnik <[email protected]> |
| License: | Artistic-2.0 |
| Version: | 0.0.0.9000 |
| Built: | 2026-09-29 09:38:58 UTC |
| Source: | https://github.com/aleks-wehi/PlotTrellis |
Starts the PlotTrellis genomic track composer: a 2-page Shiny app (Compose | Output) that lets you build plotgardener-based visualisations without writing code, and download a standalone R script that reproduces the exact figure offline. Blocks until the app is closed; on first run (or when re-entering project settings), automatically launches the setup wizard first and continues straight into the composer once it's saved – no separate re-launch needed.
PlotTrellisApp( project_dir = tools::R_user_dir("PlotTrellis", which = "config"), ... )PlotTrellisApp( project_dir = tools::R_user_dir("PlotTrellis", which = "config"), ... )
project_dir |
Directory holding this project's |
... |
Passed through to |
Invisibly, the return value of the final shiny::runApp() call
(e.g. once the browser tab is closed) – not a shiny.appobj, since this
function itself runs the app rather than returning one to run.
if (interactive()) { PlotTrellisApp(project_dir = tempdir()) }if (interactive()) { PlotTrellisApp(project_dir = tempdir()) }